pycroglia package
Subpackages
- pycroglia.core package
- Subpackages
- Submodules
InterpolationMethodResultarclength()ComputeResultcompute()BranchAnalysisEmptySkeletonget_empty_branch_analysis()init_kernel()Centroidsgaussian_mixture_predict()get_number_of_nuclei()Pointconnect_points_along_path()SkimageCellConnectivityBall3DFootprintDiamond2DFootprintDisk2DFootprintFootprintShapeOctahedron3DFootprintRectangle2DFootprintRectangle3DFootprintapply_binary_erosion()calculate_otsu_threshold()remove_small_objects()FullCellAnalysisLabeledCellsLabeledCells.ARRAY_ELEMENTS_TYPELabeledCells.zLabeledCells.yLabeledCells.xLabeledCells.labelsLabeledCells.ARRAY_ELEMENTS_TYPELabeledCells.all_cells_to_2d()LabeledCells.cell_to_2d()LabeledCells.get_border_cells()LabeledCells.get_cell()LabeledCells.get_cell_size()LabeledCells.get_cells_list()LabeledCells.labels_to_2d()LabeledCells.len()LabeledCells.selected_cells_mask()
LabelingStrategyMaskListLabelingSkimageImgLabelingCoordinatescompute()reorder_pixel_list()SegmentationConfigSegmentationConfig.DEFAULT_MIN_NUCLEUS_FRACTIONSegmentationConfig.DEFAULT_GMM_N_INITSegmentationConfig.cut_off_sizeSegmentationConfig.min_sizeSegmentationConfig.connectivitySegmentationConfig.min_nucleus_fractionSegmentationConfig.gmm_n_initSegmentationConfig.DEFAULT_GMM_N_INITSegmentationConfig.DEFAULT_MIN_NUCLEUS_FRACTIONSegmentationConfig.connectivitySegmentationConfig.cut_off_sizeSegmentationConfig.gmm_n_initSegmentationConfig.min_nucleus_fractionSegmentationConfig.min_size
segment_cell()segment_single_cell()TerritorialVolume
- Module contents
- pycroglia.ui package